In Silico Prediction of Distinct HMW PAH-Associated Pathways in Allergic Rhinitis: Chemokine-Related Targets of BaP and Metabolic Enzyme Targets of BaA/DBA
DOI:
https://doi.org/10.71204/13dkj505Keywords:
Polycyclic Aromatic Hydrocarbons, Allergic Rhinitis, Network Toxicology, Molecular Docking, In Silico AnalysisAbstract
Polycyclic aromatic hydrocarbons (PAHs), major atmospheric pollutants, have been associated with allergic respiratory disease, but the molecular links between individual PAHs and allergic rhinitis (AR) remain incompletely characterized. This in silico study explored predicted associations of three high-molecular-weight PAHs—benzo[a]pyrene (BaP), benzo[a]anthracene (BaA), and dibenz[a,h]anthracene (DBA)—with AR-related molecular networks. We integrated ADMET prediction (ADMETlab 2.0), multi-source target identification, network topology analysis (STRING and Cytoscape), functional enrichment (DAVID), and molecular docking (AutoDock Vina). ADMET analysis generated multiple toxicological alerts for all three compounds. Network analysis identified 191, 138, and 159 overlapping targets for the BaP–AR, BaA–AR, and DBA–AR datasets, respectively. BaP-associated targets were preferentially enriched in chemotaxis and chemokine signaling, whereas BaA- and DBA-associated targets were more strongly enriched in xenobiotic and cytochrome P450-related metabolic pathways. Molecular docking yielded energetically favorable predicted poses between BaP and chemokine-related hub proteins (CCL2, CCL5, CXCL8, CXCL12, and CXCR4) and between BaA/DBA and metabolic hub proteins, including ABCB1, CYP1A2, and CYP3A4. Taken together, these analyses generate a hypothesis that BaP may be preferentially associated with chemokine-related inflammatory networks, whereas BaA and DBA may be associated with metabolic-enzyme networks that could influence endogenous inflammatory mediator metabolism or drug disposition. Given its computational scope, this study yields in silico-generated hypotheses and candidate targets warranting experimental validation.
References
Abdel-Shafy, H. I., & Mansour, M. S. M. (2016). A review on polycyclic aromatic hydrocarbons: Source, environmental impact, effect on human health and remediation. Egyptian Journal of Petroleum, 25(1), 107-123.
Al-Daghri, N. M., Alokail, M. S., Abd-Alrahman, S. H., Draz, H. M., Yakout, S. M., & Clerici, M. (2013). Polycyclic aromatic hydrocarbon exposure and pediatric asthma in children: a case-control study. Environ Health, 12, 1.
Barbosa, F., Jr., Rocha, B. A., Souza, M. C. O., Bocato, M. Z., Azevedo, L. F., Adeyemi, J. A., Santana, A., & Campiglia, A. D. (2023). Polycyclic aromatic hydrocarbons (PAHs): Updated aspects of their determination, kinetics in the human body, and toxicity. J Toxicol Environ Health B Crit Rev, 26(1), 28-65.
Bardou, P., Mariette, J., Escudié, F., Djemiel, C., & Klopp, C. (2014). jvenn: an interactive Venn diagram viewer. Bmc Bioinformatics, 15(1), 293.
Bernstein, J. A., Bernstein, J. S., Makol, R., & Ward, S. (2024). Allergic Rhinitis: A Review. Jama, 331(10), 866-877.
Bousquet, J., Anto, J. M., Bachert, C., Baiardini, I., Bosnic-Anticevich, S., Walter Canonica, G., Melén, E., Palomares, O., Scadding, G. K., Togias, A., & Toppila-Salmi, S. (2020). Allergic rhinitis. Nat Rev Dis Primers, 6(1), 95.
Bukowska, B., Mokra, K., & Michałowicz, J. (2022). Benzo[a]pyrene-Environmental Occurrence, Human Exposure, and Mechanisms of Toxicity. Int J Mol Sci, 23(11).
Colás, C., Brosa, M., Antón, E., Montoro, J., Navarro, A., Dordal, M. T., Dávila, I., Fernández-Parra, B., Ibáñez, M. D. P., Lluch-Bernal, M., Matheu, V., Rondón, C., Sánchez, M. C., & Valero, A. (2017). Estimate of the total costs of allergic rhinitis in specialized care based on real-world data: the FERIN Study. Allergy, 72(6), 959-966.
Coudert, E., Gehant, S., de Castro, E., Pozzato, M., Baratin, D., Neto, T., Sigrist, C. J. A., Redaschi, N., & Bridge, A. (2023). Annotation of biologically relevant ligands in UniProtKB using ChEBI. Bioinformatics, 39(1).
Cox, L. (2016). The role of allergen immunotherapy in the management of allergic rhinitis. Am J Rhinol Allergy, 30(1), 48-53.
Feng, C., Shao, Y., Ye, T., Cai, C., Yin, C., Li, X., Liu, H., Ma, H., Yu, B., Qin, M., Chen, Y., Yang, Y., Xu, W., Zhu, Q., Jia, P., & Yang, S. (2023). Associations between long-term exposure to PM(2.5) chemical constituents and allergic diseases: evidence from a large cohort study in China. Sci Total Environ, 904, 166755.
Filppula, A. M., Laitila, J., Neuvonen, P. J., & Backman, J. T. (2011). Reevaluation of the microsomal metabolism of montelukast: major contribution by CYP2C8 at clinically relevant concentrations. Drug Metab Dispos, 39(5), 904-911.
Guengerich, F. P., Waterman, M. R., & Egli, M. (2016). Recent Structural Insights into Cytochrome P450 Function. Trends Pharmacol Sci, 37(8), 625-640.
Hew, K. M., Walker, A. I., Kohli, A., Garcia, M., Syed, A., McDonald-Hyman, C., Noth, E. M., Mann, J. K., Pratt, B., Balmes, J., Hammond, S. K., Eisen, E. A., & Nadeau, K. C. (2015). Childhood exposure to ambient polycyclic aromatic hydrocarbons is linked to epigenetic modifications and impaired systemic immunity in T cells. Clin Exp Allergy, 45(1), 238-248.
Holme, J. A., Vondráček, J., Machala, M., Lagadic-Gossmann, D., Vogel, C. F. A., Le Ferrec, E., Sparfel, L., & Øvrevik, J. (2023). Lung cancer associated with combustion particles and fine particulate matter (PM(2.5)) - The roles of polycyclic aromatic hydrocarbons (PAHs) and the aryl hydrocarbon receptor (AhR). Biochem Pharmacol, 216, 115801.
Huang da, W., Sherman, B. T., & Lempicki, R. A. (2009). Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc, 4(1), 44-57.
Jung, K. H., Perzanowski, M., Rundle, A., Moors, K., Yan, B., Chillrud, S. N., Whyatt, R., Camann, D., Perera, F. P., & Miller, R. L. (2014). Polycyclic aromatic hydrocarbon exposure, obesity and childhood asthma in an urban cohort. Environ Res, 128, 35-41.
Karimi, P., Peters, K. O., Bidad, K., & Strickland, P. T. (2015). Polycyclic aromatic hydrocarbons and childhood asthma. Eur J Epidemiol, 30(2), 91-101.
Låg, M., Øvrevik, J., Refsnes, M., & Holme, J. A. (2020). Potential role of polycyclic aromatic hydrocarbons in air pollution-induced non-malignant respiratory diseases. Respir Res, 21(1), 299.
Li, S., Wu, W., Wang, G., Zhang, X., Guo, Q., Wang, B., Cao, S., Yan, M., Pan, X., Xue, T., Gong, J., & Duan, X. (2022). Association between exposure to air pollution and risk of allergic rhinitis: A systematic review and meta-analysis. Environ Res, 205, 112472.
Li, Z., Yu, S., Jiang, Y., & Fu, Y. (2022). Chemokines and chemokine receptors in allergic rhinitis: from mediators to potential therapeutic targets. Eur Arch Otorhinolaryngol, 279(11), 5089-5095.
Liu, G., Niu, Z., Van Niekerk, D., Xue, J., & Zheng, L. (2008). Polycyclic aromatic hydrocarbons (PAHs) from coal combustion: emissions, analysis, and toxicology. Rev Environ Contam Toxicol, 192, 1-28.
Liu, J., Chen, G., Qin, X., Sun, Q., & Guo, Z. (2024). Effects of Benzo[α]pyrene on Mucus Secretion and Tissue Remodeling in a Rat Model of Allergic Rhinitis. Ann Otol Rhinol Laryngol, 133(10), 886-892.
Lu, C., Liu, Z., Liao, H., Yang, W., Li, Q., & Liu, Q. (2022). Effects of early life exposure to home environmental factors on childhood allergic rhinitis: Modifications by outdoor air pollution and temperature. Ecotoxicol Environ Saf, 244, 114076.
Lubitz, S., Schober, W., Pusch, G., Effner, R., Klopp, N., Behrendt, H., & Buters, J. T. (2010). Polycyclic aromatic hydrocarbons from diesel emissions exert proallergic effects in birch pollen allergic individuals through enhanced mediator release from basophils. Environ Toxicol, 25(2), 188-197.
Malik, A. I., Rowan-Carroll, A., Williams, A., Lemieux, C. L., Long, A. S., Arlt, V. M., Phillips, D. H., White, P. A., & Yauk, C. L. (2013). Hepatic genotoxicity and toxicogenomic responses in Muta™Mouse males treated with dibenz[a,h]anthracene. Mutagenesis, 28(5), 543-554.
Mizutani, N., Nabe, T., Ohtani, Y., Han, H. Y., Fujii, M., Yoshino, S., Hirayama, T., & Kohno, S. (2007). Polycyclic aromatic hydrocarbons aggravate antigen-induced nasal blockage in experimental allergic rhinitis. J Pharmacol Sci, 105(3), 291-297.
Shannon, P., Markiel, A., Ozier, O., Baliga, N. S., Wang, J. T., Ramage, D., Amin, N., Schwikowski, B., & Ideker, T. (2003). Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res, 13(11), 2498-2504.
Srogi, K. (2007). Monitoring of environmental exposure to polycyclic aromatic hydrocarbons: a review. Environ Chem Lett, 5(4), 169-195.
Tajima, H., Tajiki-Nishino, R., Watanabe, Y., Kurata, K., & Fukuyama, T. (2020). Activation of aryl hydrocarbon receptor by benzo[a]pyrene increases interleukin 33 expression and eosinophil infiltration in a mouse model of allergic airway inflammation. J Appl Toxicol, 40(11), 1545-1553.
Trott, O., & Olson, A. J. (2010). AutoDock Vina: improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading. J Comput Chem, 31(2), 455-461.
Wang, S. Y., Chen, Q., Chen, Z. X., Chen, J., Yuan, J., Dai, L. S., Chen, L. G., & Zhang, X. D. (2025). Impact of metabolic enzyme activity variability on dabrafenib disposition. Front Pharmacol, 16, 1643618.
Wang, X., Wang, X., Qi, J., Gong, S., Wang, C., Li, L., Fan, L., Liu, H., Cao, Y., Liu, M., Han, X., Su, L., Yao, X., Tysklind, M., & Wang, X. (2023). Levels, distribution, sources and children health risk of PAHs in residential dust: A multi-city study in China. Sci Total Environ, 862, 160760.
Xiong, G., Wu, Z., Yi, J., Fu, L., Yang, Z., Hsieh, C., Yin, M., Zeng, X., Wu, C., Lu, A., Chen, X., Hou, T., & Cao, D. (2021). ADMETlab 2.0: an integrated online platform for accurate and comprehensive predictions of ADMET properties. Nucleic Acids Res, 49(W1), W5-w14.
Yu, Y. Y., Jin, H., & Lu, Q. (2022). Effect of polycyclic aromatic hydrocarbons on immunity. J Transl Autoimmun, 5, 100177.
Yumibe, N., Huie, K., Chen, K. J., Snow, M., Clement, R. P., & Cayen, M. N. (1996). Identification of human liver cytochrome P450 enzymes that metabolize the nonsedating antihistamine loratadine. Formation of descarboethoxyloratadine by CYP3A4 and CYP2D6. Biochem Pharmacol, 51(2), 165-172.
Zhang, Y., Lan, F., & Zhang, L. (2021). Advances and highlights in allergic rhinitis. Allergy, 76(11), 3383-3389.
Zhang, Z., Huang, X., Gan, C., Xue, S., He, Y., & Wen, C. (2026). In-vitro and in-vivo CYP3A4 Variants: Neratinib metabolism and drug interaction risk. Chem Biol Interact, 427, 111935.
Zheng, J., Zeng, M., Nian, J. B., Zeng, L. Y., Fu, Z., Huang, Q. J., & Wei, X. (2020). The CXCR4/miR-125b/FoxP3 axis regulates the function of the epithelial barrier via autophagy in allergic rhinitis. Am J Transl Res, 12(6), 2570-2584.
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Copyright (c) 2026 Yue He, Yibo He, Junfeng Xi, An Chang, Zeyu Guo, Xianzhi Liu, Jiayu Li, Jiaxuan Li, Zhao Wang, Dong Chen (Author)

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